9 Lesser Known Gems in Japan That Are Worth Discovering

By: Bhavesh B.

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The typical list of must-visit cities in Japan invariably includes Tokyo, Kyoto, and Hiroshima, not to mention the picturesque Japanese Alps. However, there's a side of Japan seldom touched by the usual tourists. Take a detour and immerse yourself in the breathtaking sights and surroundings that so many travelers miss on their excursions across the country.

Related: These Photos Capture the Weirdness and Beauty of Japan

1. Shirakawa-go

Nestled within the mountains of Gifu Prefecture, Shirakawa-go is a charming village that evokes a nostalgic journey through time. This UNESCO World Heritage site is known for its traditional gassho-zukuri farmhouses, some of which have been standing for more than 250 years. The steep thatched roofs, which were cleverly built to endure heavy snowfall, add to the architectural appeal.

Shirakawa-go invites visitors to lose themselves in a tranquil and almost forgotten world. The town is an ideal example of Japan's undiscovered riches, offering a unique view into the country's agricultural past. While walking around the town, you'll pass by picturesque rice terraces and clear, babbling streams, highlighting Japan's inherent beauty.

2. Kiso Valley

Set against the backdrop of the Nagano Alps, the valley is dotted with charming traditional Japanese towns that transport tourists to 18th-century Japan. Originally, these 'post-towns' were used as rest and stopover points for travelers traveling along the once-famous Nakasendo trail between Tokyo and Kyoto.

3. Yamadera

Its name literally translates as 'mountain temple', and with a spectacular view of the valley and mountains below, it certainly does not disappoint. Perched on the hillsides of Mount Hoju, Yamadera is known for its picturesque landscapes and cultural eminence. The temple compound comprises various edifices, with the primary hall showcasing a statue of Yakushi Nyorai, the Buddha of Healing.

A unique aspect of Yamadera is the challenging climb up a stone staircase with over a thousand steps that lead pilgrims to the main hall. This ascent not only represents a spiritual expedition but also unveils awe-inspiring panoramic views of the surrounding mountains and valleys.

4. Ishigaki

The Okinawa region often remains in the shadows, as most tourists don't immediately associate Japan with a tropical paradise. However, Okinawa boasts some of the world's most exquisite beaches, featuring powdery white sands and waters that shimmer in a myriad of blue and green hues.

While the main island is alive with activity, cuisine, and entertainment, the true splendor of Okinawa can be found on the more secluded islands spread across the Ryukyu archipelago. Ishigaki, located at one of Japan's southernmost points, offers surreal landscapes.

5. Lake Suwa

This idyllic lakeside city exudes charm with its old shrines, delectable eateries, and regenerating hot springs. Locals consider the southern lakefront to be an onsen getaway, and it is littered with traditional inns or ryokans that have their own hot springs for guests to soak in. The wider ones often feature open-air baths on top floors, providing a stunning view of the lake as you soak in the revitalizing waters.

6. Iya Valley

Deep in the heart of Shikoku Island lies Iya Valley, a tranquil refuge that transports visitors away from the modern world. This remote area, known for its spectacular mountain scenery and traditional vine bridges, is one of Japan's best-kept secrets. The valley's abundant greenery and steep gorges provide a breathtaking setting for both adventure and relaxation.

For nature lovers, the Iya Valley offers stunning vistas and hidden waterfalls along ancient trails that wind through the mountains. Visitors may experience the authentic charm of rural Japan by visiting one of the valley's tiny villages, where time appears to have left an everlasting imprint.

7. Tottori

Tucked away in the coastal city of Tottori, the Tottori Sand Dunes are the largest dunes in the country and offer a stunning departure from the typically green Japanese scenery. Exploring these dunes is a memorable experience for anyone looking for hidden gems in Japan, as it provides an almost surreal encounter with the desert. Travelers can explore the vast sandy area in a variety of ways: on foot for a leisurely stroll, by camel for a touch of exoticism, or by sand buggy for an adrenaline-fueled adventure.

8. Yakushima

Not many visit this subtropical island adorned with ancient forests and untamed pathways, yet those who do find themselves pleasantly amazed. A must-see for nature lovers, the majority of the island's forest has thrived for almost a millennium, with trees said to have roots dating back 7,000 years. Exploring the wooded landscapes is an awe-inspiring experience, particularly when mist weaves through, creating an otherworldly, enchanting ambiance.

9. Hakodate

While many tourists visit Hokkaido, most of them limit their exploration to Sapporo, missing out on the stunning vistas that the northern island has to offer. Hakodate, located at the southernmost point of Hokkaido, has one of the most stunning night vistas in the country. You can enjoy a panoramic view of the city and the tail of the island from the mountain right at the tip of the peninsula. Nestled along the shoreline, the region is well-known for its delicious fresh seafood, which can be sampled at the different fish markets.